cd /data/user/mydir ; /usr/local/omssa/omssacl -d /fdb/blastdb/nr -f file1.dta -ox file1.xml; perl /usr/local/omssa/readOMSSA.pl file1.xml >file1.out
cd /data/user/mydir ; /usr/local/omssa/omssacl -d /fdb/blastdb/nr -f file2.dta -ox file2.xml; perl /usr/local/omssa/readOMSSA.pl file2.xml >file2.out
cd /data/user/mydir ; /usr/local/omssa/omssacl -d /fdb/blastdb/nr -f file3.dta -ox file3.xml; perl /usr/local/omssa/readOMSSA.pl file3.xml >file3.out
cd /data/user/mydir ; /usr/local/omssa/omssacl -d /fdb/blastdb/nr -f file4.dta -ox file4.xml; perl /usr/local/omssa/readOMSSA.pl file4.xml >file4.out